Analyse cohort 4 RNA-seq
Atlas methods validation
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Grants, papers, people, meetings, tasks
Grants fund projects, which produce papers, posters, and talks. Meetings lead to tasks. LabTab links them the way scientists think about their work.
- Import your papers and literature from Zotero or a BibTeX file.
- Track papers, posters, and talks against the projects and grants that produced them.
- Sync meetings with Google Calendar and Outlook, so your team can keep using the calendar they know.
- Draft recommendation letters with the student's papers, posters, grants, and meeting notes already linked on the page.
Grants
NIH R01-CA-123456
Neural atlas · $500k · ends Jun 2027
Papers
- Annotation transferCell Systems · 2025
- Active-curation strategiesNat Methods · 2025
- Cohort-3 QC preprintbioRxiv · 2024
People
14
members
2 postdocs · 6 PhDs · 4 MScs · 1 RA · 1 manager
Meetings
11:001:1 · Alexsupervision
14:00Group meetingweekly
16:30Paper clubjournal
Tasks
- Submit Figure 3 draft
- Review Alex PhD outline
- Confirm microscope booking
Keep your results connected to your work.
Add datasets, images, microscopy, sequencing and analysis files to the task that produced them. Then link each result to the paper, poster, talk or grant that uses it.
Differential expression analysis
- cohort4.fastq
- counts.h5ad
- volcano-plot.png
Used in
- PaperCortical organoid maturation
- PosterSfN 2026
- TalkOrganoid methods seminar
- GrantWellcome progress report
Find grants and build funder reports.
Search OpenAlex, NIH RePORTER, UKRI, OpenAIRE and NIHR for awards linked to your PI profile. When a report is due, LabTab gathers the publications, members and projects already connected to the grant, then exports the draft to Markdown or Google Docs.
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Your lab, on the same page.
Write lab meeting notes together, so they're finished before the meeting ends.
labtab.app / thomson-lab / notes / tuesday-group
Lab notes · Tuesday group meeting
28 Apr 2026 · 10:00
3 editing
BIAsk
Action items
- Submit Figure 3 draft by Friday
- Review qPCR controls with Mei
Discussion
Agreed to prioritise the Cohort 4 timeline ahead of the December review. Tim will draft the methods section.
Read and annotate papers together.
Highlight, draw and comment on PDFs in real time, with everyone's presence visible. Export the annotated copy from literature, papers or posters whenever you need it.
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Cortical organoid maturation
Thomson Lab · Draft manuscript
We profiled longitudinal changes across four independently derived cortical organoid cohorts.
The results show a reproducible maturation trajectory across both sequencing and microscopy measurements.
These data support a shared window for downstream perturbation studies.
Mei
Comments
AP
Alex
can we make the axes clearer on this figure?
MW
Mei
yes, will do hereUpdate axes on Figure 2
1 task created
Update axes on Figure 2
in projectCortical Organoid Project
linked to paperCortical organoid maturation
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labtab.app / thomson-lab
Tasks · open
- Submit Figure 3 draftHighTomorrow
- Review Alex PhD outlineMedFri 26
- Confirm microscope bookingMedMon 29
- NIH RPPR draft → finalHighApr 30
- Mei rotation scheduleLowMay 02
tPress t → Tasks
nPress n → Create on this page
mPress m → Meetings
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Recommendation letters, half-written before you start.
The student's papers, posters, grants, and six months of meeting notes are in the draft the moment you open it.
Recommendation letter · Jane Chang
Draft readyJane joined the lab in 2023 and has since first-authored two papers, presented at SfN, and led the cortical-atlas harmonisation effort. Her qPCR protocol is now standard across three of our projects…
Already on the page
4 papers2 postersWellcome grant6 months of notes
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LabTab nudges you in the weeks before birthdays, work anniversaries, conference deadlines, and follow-ups.
Sarah's work anniversaryThursday
SfN abstract deadlinein 5 days
1:1 with Meitomorrow · 14:00
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Last meeting's notes, completed tasks, and active project links are on the page before you get started. No 'remind me where we got to?' at the start of every meeting.
1:1 · Alex Romero
Today · 14:00Last meeting
- Agreed to resubmit figure 3 by Friday
- Discussed rotation-student supervision plan
Open tasks
- Figure 3 revisions
- Share thesis timeline
Atlas project
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Invite collaborators to specific projects, grants, meetings or papers. Choose whether they can view, comment or edit. They only see the records you share.
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priya@example.org
Dr Marcus Lee
marcus@example.org
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- ProjectsAtlas methods validation
- GrantsWellcome Discovery Award
- PapersCortical organoid maturation
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Export your lab's data in open formats whenever you need it. Download everything at once or individual meeting notes, projects, and grants. You can also access your records through the public API or Python CLI.
Portability in practice
Get your lab's records and attached files in one ZIP, ready to keep as a backup or move into another system.
Download a single item without exporting the whole lab: notes as Markdown, papers as BibTeX, meetings as iCal, and other records as JSON, all in standardised, open, and portable formats.
Access your lab's records through the REST API, so your own scripts and tools can work with the same data. Personal keys let you limit what each connection can access.
Settings · Data portability
Export the Thomson Lab
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Markdown
meeting notes · tasks · grants
JSON
machine-readable archive
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all papers with DOIs
iCal
every meeting + deadline
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Script your lab the way you want to.
A Python CLI and a public REST API for PIs who'd rather grep their lab than click through it.
~/labs/thomson-lab - labtab
WHEN TITLE WITH LOCATION TASKS
Mon 28 Apr 10:00 Lab meeting Whole lab (8) Huxley 401 2 open
Tue 29 Apr 14:00 1:1 - Tim Smith Tim Zoom 1 open
Wed 30 Apr 09:30 Atlas project review Tim, Mei, Alex Huxley 401 3 open
Thu 01 May 16:00 Wellcome grant prep Mei Zoom 1 due
Fri 02 May 11:00 Postdoc supervision - Alex Alex Huxley 211 -
5 meetings - 7 open tasks - next: today at 10:00
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